aboutsummaryrefslogtreecommitdiffstats
path: root/contrib/python/matplotlib/py2/src/qhull_wrap.c
blob: 836a16c555b5392b8f257d59e957246ad7a55400 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
/*
 * Wrapper module for libqhull, providing Delaunay triangulation.
 *
 * This module's methods should not be accessed directly.  To obtain a Delaunay
 * triangulation, construct an instance of the matplotlib.tri.Triangulation
 * class without specifying a triangles array.
 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
#include "numpy/noprefix.h"
#include "qhull_ra.h"
#include <stdio.h>


#if PY_MAJOR_VERSION >= 3
#define PY3K 1
#else
#define PY3K 0
#endif

#ifndef MPL_DEVNULL
#error "MPL_DEVNULL must be defined as the OS-equivalent of /dev/null"
#endif

#define STRINGIFY(x) STR(x)
#define STR(x) #x

static qhT qhData;
static qhT* qh = &qhData;

static const char* qhull_error_msg[6] = {
    "",                     /* 0 = qh_ERRnone */
    "input inconsistency",  /* 1 = qh_ERRinput */
    "singular input data",  /* 2 = qh_ERRsingular */
    "precision error",      /* 3 = qh_ERRprec */
    "insufficient memory",  /* 4 = qh_ERRmem */
    "internal error"};      /* 5 = qh_ERRqhull */


/* Return the indices of the 3 vertices that comprise the specified facet (i.e.
 * triangle). */
static void
get_facet_vertices(const facetT* facet, int indices[3])
{
    vertexT *vertex, **vertexp;
    FOREACHvertex_(facet->vertices)
        *indices++ = qh_pointid(qh, vertex->point);
}

/* Return the indices of the 3 triangles that are neighbors of the specified
 * facet (triangle). */
static void
get_facet_neighbours(const facetT* facet, const int* tri_indices,
                     int indices[3])
{
    facetT *neighbor, **neighborp;
    FOREACHneighbor_(facet)
        *indices++ = (neighbor->upperdelaunay ? -1 : tri_indices[neighbor->id]);
}

/* Return 1 if the specified points arrays contain at least 3 unique points,
 * or 0 otherwise. */
static int
at_least_3_unique_points(int npoints, const double* x, const double* y)
{
    int i;
    const int unique1 = 0;  /* First unique point has index 0. */
    int unique2 = 0;        /* Second unique point index is 0 until set. */

    if (npoints < 3)
        return 0;

    for (i = 1; i < npoints; ++i) {
        if (unique2 == 0) {
            /* Looking for second unique point. */
            if (x[i] != x[unique1] || y[i] != y[unique1])
                unique2 = i;
        }
        else {
            /* Looking for third unique point. */
            if ( (x[i] != x[unique1] || y[i] != y[unique1]) &&
                 (x[i] != x[unique2] || y[i] != y[unique2]) ) {
                /* 3 unique points found, with indices 0, unique2 and i. */
                return 1;
            }
        }
    }

    /* Run out of points before 3 unique points found. */
    return 0;
}

/* Delaunay implementation methyod.  If hide_qhull_errors is 1 then qhull error
 * messages are discarded; if it is 0 then they are written to stderr. */
static PyObject*
delaunay_impl(int npoints, const double* x, const double* y,
              int hide_qhull_errors)
{
    coordT* points = NULL;
    facetT* facet;
    int i, ntri, max_facet_id;
    FILE* error_file = NULL;    /* qhull expects a FILE* to write errors to. */
    int exitcode;               /* Value returned from qh_new_qhull(). */
    int* tri_indices = NULL;    /* Maps qhull facet id to triangle index. */
    int indices[3];
    int curlong, totlong;       /* Memory remaining after qh_memfreeshort. */
    PyObject* tuple;            /* Return tuple (triangles, neighbors). */
    const int ndim = 2;
    npy_intp dims[2];
    PyArrayObject* triangles = NULL;
    PyArrayObject* neighbors = NULL;
    int* triangles_ptr;
    int* neighbors_ptr;
    double x_mean = 0.0;
    double y_mean = 0.0;

    QHULL_LIB_CHECK

    /* Allocate points. */
    points = (coordT*)malloc(npoints*ndim*sizeof(coordT));
    if (points == NULL) {
        PyErr_SetString(PyExc_MemoryError,
                        "Could not allocate points array in qhull.delaunay");
        goto error_before_qhull;
    }

    /* Determine mean x, y coordinates. */
    for (i = 0; i < npoints; ++i) {
        x_mean += x[i];
        y_mean += y[i];
    }
    x_mean /= npoints;
    y_mean /= npoints;

    /* Prepare points array to pass to qhull. */
    for (i = 0; i < npoints; ++i) {
        points[2*i  ] = x[i] - x_mean;
        points[2*i+1] = y[i] - y_mean;
    }

    /* qhull expects a FILE* to write errors to. */
    if (hide_qhull_errors) {
        /* qhull errors are ignored by writing to OS-equivalent of /dev/null.
         * Rather than have OS-specific code here, instead it is determined by
         * setupext.py and passed in via the macro MPL_DEVNULL. */
        error_file = fopen(STRINGIFY(MPL_DEVNULL), "w");
        if (error_file == NULL) {
            PyErr_SetString(PyExc_RuntimeError,
                            "Could not open devnull in qhull.delaunay");
            goto error_before_qhull;
        }
    }
    else {
        /* qhull errors written to stderr. */
        error_file = stderr;
    }

    /* Perform Delaunay triangulation. */
    exitcode = qh_new_qhull(qh, ndim, npoints, points, False,
                            "qhull d Qt Qbb Qc Qz", NULL, error_file);
    if (exitcode != qh_ERRnone) {
        PyErr_Format(PyExc_RuntimeError,
                     "Error in qhull Delaunay triangulation calculation: %s (exitcode=%d)%s",
                     qhull_error_msg[exitcode], exitcode,
                     hide_qhull_errors ? "; use python verbose option (-v) to see original qhull error." : "");
        goto error;
    }

    /* Split facets so that they only have 3 points each. */
    qh_triangulate(qh);

    /* Determine ntri and max_facet_id.
       Note that libqhull uses macros to iterate through collections. */
    ntri = 0;
    FORALLfacets {
        if (!facet->upperdelaunay)
            ++ntri;
    }

    max_facet_id = qh->facet_id - 1;

    /* Create array to map facet id to triangle index. */
    tri_indices = (int*)malloc((max_facet_id+1)*sizeof(int));
    if (tri_indices == NULL) {
        PyErr_SetString(PyExc_MemoryError,
                        "Could not allocate triangle map in qhull.delaunay");
        goto error;
    }

    /* Allocate python arrays to return. */
    dims[0] = ntri;
    dims[1] = 3;
    triangles = (PyArrayObject*)PyArray_SimpleNew(ndim, dims, NPY_INT);
    if (triangles == NULL) {
        PyErr_SetString(PyExc_MemoryError,
                        "Could not allocate triangles array in qhull.delaunay");
        goto error;
    }

    neighbors = (PyArrayObject*)PyArray_SimpleNew(ndim, dims, NPY_INT);
    if (neighbors == NULL) {
        PyErr_SetString(PyExc_MemoryError,
                        "Could not allocate neighbors array in qhull.delaunay");
        goto error;
    }

    triangles_ptr = (int*)PyArray_DATA(triangles);
    neighbors_ptr = (int*)PyArray_DATA(neighbors);

    /* Determine triangles array and set tri_indices array. */
    i = 0;
    FORALLfacets {
        if (!facet->upperdelaunay) {
            tri_indices[facet->id] = i++;
            get_facet_vertices(facet, indices);
            *triangles_ptr++ = (facet->toporient ? indices[0] : indices[2]);
            *triangles_ptr++ = indices[1];
            *triangles_ptr++ = (facet->toporient ? indices[2] : indices[0]);
        }
        else
            tri_indices[facet->id] = -1;
    }

    /* Determine neighbors array. */
    FORALLfacets {
        if (!facet->upperdelaunay) {
            get_facet_neighbours(facet, tri_indices, indices);
            *neighbors_ptr++ = (facet->toporient ? indices[2] : indices[0]);
            *neighbors_ptr++ = (facet->toporient ? indices[0] : indices[2]);
            *neighbors_ptr++ = indices[1];
        }
    }

    /* Clean up. */
    qh_freeqhull(qh, !qh_ALL);
    qh_memfreeshort(qh, &curlong, &totlong);
    if (curlong || totlong)
        PyErr_WarnEx(PyExc_RuntimeWarning,
                     "Qhull could not free all allocated memory", 1);
    if (hide_qhull_errors)
        fclose(error_file);
    free(tri_indices);
    free(points);

    tuple = PyTuple_New(2);
    PyTuple_SetItem(tuple, 0, (PyObject*)triangles);
    PyTuple_SetItem(tuple, 1, (PyObject*)neighbors);
    return tuple;

error:
    /* Clean up. */
    Py_XDECREF(triangles);
    Py_XDECREF(neighbors);
    qh_freeqhull(qh, !qh_ALL);
    qh_memfreeshort(qh, &curlong, &totlong);
    /* Don't bother checking curlong and totlong as raising error anyway. */
    if (hide_qhull_errors)
        fclose(error_file);
    free(tri_indices);

error_before_qhull:
    free(points);

    return NULL;
}

/* Process python arguments and call Delaunay implementation method. */
static PyObject*
delaunay(PyObject *self, PyObject *args)
{
    PyObject* xarg;
    PyObject* yarg;
    PyArrayObject* xarray;
    PyArrayObject* yarray;
    PyObject* ret;
    int npoints;
    const double* x;
    const double* y;

    if (!PyArg_ParseTuple(args, "OO", &xarg, &yarg)) {
        PyErr_SetString(PyExc_ValueError, "expecting x and y arrays");
        return NULL;
    }

    xarray = (PyArrayObject*)PyArray_ContiguousFromObject(xarg, NPY_DOUBLE,
                                                          1, 1);
    yarray = (PyArrayObject*)PyArray_ContiguousFromObject(yarg, NPY_DOUBLE,
                                                          1, 1);
    if (xarray == 0 || yarray == 0 ||
        PyArray_DIM(xarray,0) != PyArray_DIM(yarray, 0)) {
        Py_XDECREF(xarray);
        Py_XDECREF(yarray);
        PyErr_SetString(PyExc_ValueError,
                        "x and y must be 1D arrays of the same length");
        return NULL;
    }

    npoints = PyArray_DIM(xarray, 0);

    if (npoints < 3) {
        Py_XDECREF(xarray);
        Py_XDECREF(yarray);
        PyErr_SetString(PyExc_ValueError,
                        "x and y arrays must have a length of at least 3");
        return NULL;
    }

    x = (const double*)PyArray_DATA(xarray);
    y = (const double*)PyArray_DATA(yarray);

    if (!at_least_3_unique_points(npoints, x, y)) {
        Py_XDECREF(xarray);
        Py_XDECREF(yarray);
        PyErr_SetString(PyExc_ValueError,
                        "x and y arrays must consist of at least 3 unique points");
        return NULL;
    }

    ret = delaunay_impl(npoints, x, y, Py_VerboseFlag == 0);

    Py_XDECREF(xarray);
    Py_XDECREF(yarray);
    return ret;
}

/* Return qhull version string for assistance in debugging. */
static PyObject*
version(void)
{
    return PyBytes_FromString(qh_version);
}

static PyMethodDef qhull_methods[] = {
    {"delaunay", (PyCFunction)delaunay, METH_VARARGS, ""},
    {"version", (PyCFunction)version, METH_NOARGS, ""},
    {NULL, NULL, 0, NULL}
};

#if PY3K
static struct PyModuleDef qhull_module = {
    PyModuleDef_HEAD_INIT,
    "qhull",
    "Computing Delaunay triangulations.\n",
    -1,
    qhull_methods,
    NULL, NULL, NULL, NULL
};

#define ERROR_RETURN return NULL

PyMODINIT_FUNC
PyInit__qhull(void)
#else
#define ERROR_RETURN return

PyMODINIT_FUNC
init_qhull(void)
#endif
{
    PyObject* m;

    #if PY3K
        m = PyModule_Create(&qhull_module);
    #else
        m = Py_InitModule3("_qhull", qhull_methods,
                           "Computing Delaunay triangulations.\n");
    #endif

    if (m == NULL) {
        ERROR_RETURN;
    }

    import_array();

    #if PY3K
        return m;
    #endif
}