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|
#include "CHColumnToArrowColumn.h"
#if USE_ARROW || USE_PARQUET
// #include <base/Decimal.h>
#include <Columns/ColumnFixedString.h>
#include <Columns/ColumnNullable.h>
#include <Columns/ColumnString.h>
#include <Columns/ColumnArray.h>
#include <Columns/ColumnTuple.h>
#include <Columns/ColumnLowCardinality.h>
#include <Columns/ColumnMap.h>
#include <Core/callOnTypeIndex.h>
#include <DataTypes/DataTypeNullable.h>
#include <DataTypes/DataTypesDecimal.h>
#include <DataTypes/DataTypeArray.h>
#include <DataTypes/DataTypeTuple.h>
#include <DataTypes/DataTypeLowCardinality.h>
#include <DataTypes/DataTypeMap.h>
#include <DataTypes/DataTypeDateTime64.h>
#include <DataTypes/DataTypeFixedString.h>
#include <Processors/Formats/IOutputFormat.h>
#error #include <arrow/api.h>
#error #include <arrow/builder.h>
#error #include <arrow/type.h>
#error #include <arrow/util/decimal.h>
#define FOR_INTERNAL_NUMERIC_TYPES(M) \
M(Int8, arrow::Int8Builder) \
M(UInt16, arrow::UInt16Builder) \
M(Int16, arrow::Int16Builder) \
M(UInt32, arrow::UInt32Builder) \
M(Int32, arrow::Int32Builder) \
M(UInt64, arrow::UInt64Builder) \
M(Int64, arrow::Int64Builder) \
M(Float32, arrow::FloatBuilder) \
M(Float64, arrow::DoubleBuilder)
#define FOR_ARROW_TYPES(M) \
M(UINT8, arrow::UInt8Type) \
M(INT8, arrow::Int8Type) \
M(UINT16, arrow::UInt16Type) \
M(INT16, arrow::Int16Type) \
M(UINT32, arrow::UInt32Type) \
M(INT32, arrow::Int32Type) \
M(UINT64, arrow::UInt64Type) \
M(INT64, arrow::Int64Type) \
M(FLOAT, arrow::FloatType) \
M(DOUBLE, arrow::DoubleType) \
M(BINARY, arrow::BinaryType) \
M(STRING, arrow::StringType)
namespace DB
{
namespace ErrorCodes
{
extern const int UNKNOWN_EXCEPTION;
extern const int UNKNOWN_TYPE;
extern const int LOGICAL_ERROR;
extern const int DECIMAL_OVERFLOW;
}
static const std::initializer_list<std::pair<String, std::shared_ptr<arrow::DataType>>> internal_type_to_arrow_type =
{
{"UInt8", arrow::uint8()},
{"Int8", arrow::int8()},
{"Enum8", arrow::int8()},
{"UInt16", arrow::uint16()},
{"Int16", arrow::int16()},
{"Enum16", arrow::int16()},
{"UInt32", arrow::uint32()},
{"Int32", arrow::int32()},
{"UInt64", arrow::uint64()},
{"Int64", arrow::int64()},
{"Float32", arrow::float32()},
{"Float64", arrow::float64()},
{"Date", arrow::uint16()}, /// uint16 is used instead of date32, because Apache Arrow cannot correctly serialize Date32Array.
{"DateTime", arrow::uint32()}, /// uint32 is used instead of date64, because we don't need milliseconds.
{"Date32", arrow::date32()},
{"String", arrow::binary()},
{"FixedString", arrow::binary()},
{"Int128", arrow::fixed_size_binary(sizeof(Int128))},
{"UInt128", arrow::fixed_size_binary(sizeof(UInt128))},
{"Int256", arrow::fixed_size_binary(sizeof(Int256))},
{"UInt256", arrow::fixed_size_binary(sizeof(UInt256))},
};
static void checkStatus(const arrow::Status & status, const String & column_name, const String & format_name)
{
if (!status.ok())
throw Exception(ErrorCodes::UNKNOWN_EXCEPTION, "Error with a {} column \"{}\": {}.", format_name, column_name, status.ToString());
}
/// Invert values since Arrow interprets 1 as a non-null value, while CH as a null
static PaddedPODArray<UInt8> revertNullByteMap(const PaddedPODArray<UInt8> * null_bytemap, size_t start, size_t end)
{
PaddedPODArray<UInt8> res;
if (!null_bytemap)
return res;
res.reserve(end - start);
for (size_t i = start; i < end; ++i)
res.emplace_back(!(*null_bytemap)[i]);
return res;
}
template <typename NumericType, typename ArrowBuilderType>
static void fillArrowArrayWithNumericColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const PaddedPODArray<NumericType> & internal_data = assert_cast<const ColumnVector<NumericType> &>(*write_column).getData();
ArrowBuilderType & builder = assert_cast<ArrowBuilderType &>(*array_builder);
arrow::Status status;
PaddedPODArray<UInt8> arrow_null_bytemap = revertNullByteMap(null_bytemap, start, end);
const UInt8 * arrow_null_bytemap_raw_ptr = arrow_null_bytemap.empty() ? nullptr : arrow_null_bytemap.data();
if constexpr (std::is_same_v<NumericType, UInt8>)
status = builder.AppendValues(
reinterpret_cast<const uint8_t *>(internal_data.data() + start),
end - start,
reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
else
status = builder.AppendValues(internal_data.data() + start, end - start, reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
checkStatus(status, write_column->getName(), format_name);
}
static void fillArrowArrayWithBoolColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const PaddedPODArray<UInt8> & internal_data = assert_cast<const ColumnVector<UInt8> &>(*write_column).getData();
arrow::BooleanBuilder & builder = assert_cast<arrow::BooleanBuilder &>(*array_builder);
arrow::Status status;
PaddedPODArray<UInt8> arrow_null_bytemap = revertNullByteMap(null_bytemap, start, end);
const UInt8 * arrow_null_bytemap_raw_ptr = arrow_null_bytemap.empty() ? nullptr : arrow_null_bytemap.data();
status = builder.AppendValues(reinterpret_cast<const uint8_t *>(internal_data.data() + start), end - start, reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
checkStatus(status, write_column->getName(), format_name);
}
static void fillArrowArrayWithDateTime64ColumnData(
const DataTypePtr & type,
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto * datetime64_type = assert_cast<const DataTypeDateTime64 *>(type.get());
const auto & column = assert_cast<const ColumnDecimal<DateTime64> &>(*write_column);
arrow::TimestampBuilder & builder = assert_cast<arrow::TimestampBuilder &>(*array_builder);
arrow::Status status;
auto scale = datetime64_type->getScale();
bool need_rescale = scale % 3;
auto rescale_multiplier = DecimalUtils::scaleMultiplier<DateTime64::NativeType>(3 - scale % 3);
for (size_t value_i = start; value_i < end; ++value_i)
{
if (null_bytemap && (*null_bytemap)[value_i])
{
status = builder.AppendNull();
}
else
{
auto value = static_cast<Int64>(column[value_i].get<DecimalField<DateTime64>>().getValue());
if (need_rescale)
{
if (common::mulOverflow(value, rescale_multiplier, value))
throw Exception(ErrorCodes::DECIMAL_OVERFLOW, "Decimal math overflow");
}
status = builder.Append(value);
}
checkStatus(status, write_column->getName(), format_name);
}
}
static void fillArrowArray(
const String & column_name,
ColumnPtr & column,
const DataTypePtr & column_type,
const PaddedPODArray<UInt8> * null_bytemap,
arrow::ArrayBuilder * array_builder,
String format_name,
size_t start,
size_t end,
bool output_string_as_string,
bool output_fixed_string_as_fixed_byte_array,
std::unordered_map<String, MutableColumnPtr> & dictionary_values);
template <typename Builder>
static void fillArrowArrayWithArrayColumnData(
const String & column_name,
ColumnPtr & column,
const DataTypePtr & column_type,
const PaddedPODArray<UInt8> *,
arrow::ArrayBuilder * array_builder,
String format_name,
size_t start,
size_t end,
bool output_string_as_string,
bool output_fixed_string_as_fixed_byte_array,
std::unordered_map<String, MutableColumnPtr> & dictionary_values)
{
const auto * column_array = assert_cast<const ColumnArray *>(column.get());
ColumnPtr nested_column = column_array->getDataPtr();
DataTypePtr nested_type = assert_cast<const DataTypeArray *>(column_type.get())->getNestedType();
const auto & offsets = column_array->getOffsets();
Builder & builder = assert_cast<Builder &>(*array_builder);
arrow::ArrayBuilder * value_builder = builder.value_builder();
arrow::Status components_status;
for (size_t array_idx = start; array_idx < end; ++array_idx)
{
/// Start new array.
components_status = builder.Append();
checkStatus(components_status, nested_column->getName(), format_name);
/// Pass null null_map, because fillArrowArray will decide whether nested_type is nullable, if nullable, it will create a new null_map from nested_column
/// Note that it is only needed by gluten(https://github.com/oap-project/gluten), because array type in gluten is by default nullable.
/// And it does not influence the original ClickHouse logic, because null_map passed to fillArrowArrayWithArrayColumnData is always nullptr for ClickHouse doesn't allow nullable complex types including array type.
fillArrowArray(column_name, nested_column, nested_type, nullptr, value_builder, format_name, offsets[array_idx - 1], offsets[array_idx], output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
}
}
static void fillArrowArrayWithTupleColumnData(
const String & column_name,
ColumnPtr & column,
const DataTypePtr & column_type,
const PaddedPODArray<UInt8> * null_bytemap,
arrow::ArrayBuilder * array_builder,
String format_name,
size_t start,
size_t end,
bool output_string_as_string,
bool output_fixed_string_as_fixed_byte_array,
std::unordered_map<String, MutableColumnPtr> & dictionary_values)
{
const auto * column_tuple = assert_cast<const ColumnTuple *>(column.get());
const auto * type_tuple = assert_cast<const DataTypeTuple *>(column_type.get());
const auto & nested_types = type_tuple->getElements();
const auto & nested_names = type_tuple->getElementNames();
arrow::StructBuilder & builder = assert_cast<arrow::StructBuilder &>(*array_builder);
for (size_t i = 0; i != column_tuple->tupleSize(); ++i)
{
ColumnPtr nested_column = column_tuple->getColumnPtr(i);
fillArrowArray(
column_name + "." + nested_names[i],
nested_column, nested_types[i], null_bytemap,
builder.field_builder(static_cast<int>(i)),
format_name,
start, end,
output_string_as_string,
output_fixed_string_as_fixed_byte_array,
dictionary_values);
}
for (size_t i = start; i != end; ++i)
{
auto status = builder.Append();
checkStatus(status, column->getName(), format_name);
}
}
template<typename T>
static PaddedPODArray<Int64> extractIndexes(ColumnPtr column, size_t start, size_t end, bool shift)
{
const PaddedPODArray<T> & data = assert_cast<const ColumnVector<T> *>(column.get())->getData();
PaddedPODArray<Int64> result;
result.reserve(end - start);
if (shift)
std::transform(data.begin() + start, data.begin() + end, std::back_inserter(result), [](T value) { return Int64(value) - 1; });
else
std::transform(data.begin() + start, data.begin() + end, std::back_inserter(result), [](T value) { return Int64(value); });
return result;
}
static PaddedPODArray<Int64> extractIndexes(ColumnPtr column, size_t start, size_t end, bool shift)
{
switch (column->getDataType())
{
case TypeIndex::UInt8:
return extractIndexes<UInt8>(column, start, end, shift);
case TypeIndex::UInt16:
return extractIndexes<UInt16>(column, start, end, shift);
case TypeIndex::UInt32:
return extractIndexes<UInt32>(column, start, end, shift);
case TypeIndex::UInt64:
return extractIndexes<UInt64>(column, start, end, shift);
default:
throw Exception(ErrorCodes::LOGICAL_ERROR, "Indexes column must be ColumnUInt, got {}.", column->getName());
}
}
template <typename IndexesType, typename MappingType>
static PaddedPODArray<Int64> extractIndexesWithRemapping(ColumnPtr indexes, ColumnPtr mapping, size_t start, size_t end, bool shift)
{
const PaddedPODArray<IndexesType> & indexes_data = assert_cast<const ColumnVector<IndexesType> *>(indexes.get())->getData();
const PaddedPODArray<MappingType> & mapping_data = assert_cast<const ColumnVector<MappingType> *>(mapping.get())->getData();
PaddedPODArray<Int64> result;
result.reserve(end - start);
std::transform(indexes_data.begin() + start, indexes_data.begin() + end, std::back_inserter(result), [&](IndexesType value) { return mapping_data[Int64(value)] - shift; });
return result;
}
template <typename IndexesType>
static PaddedPODArray<Int64> extractIndexesWithRemapping(ColumnPtr indexes, ColumnPtr mapping, size_t start, size_t end, bool shift)
{
switch (mapping->getDataType())
{
case TypeIndex::UInt8:
return extractIndexesWithRemapping<IndexesType, UInt8>(indexes, mapping, start, end, shift);
case TypeIndex::UInt16:
return extractIndexesWithRemapping<IndexesType, UInt16>(indexes, mapping, start, end, shift);
case TypeIndex::UInt32:
return extractIndexesWithRemapping<IndexesType, UInt32>(indexes, mapping, start, end, shift);
case TypeIndex::UInt64:
return extractIndexesWithRemapping<IndexesType, UInt64>(indexes, mapping, start, end, shift);
default:
throw Exception(ErrorCodes::LOGICAL_ERROR, "Indexes column must be ColumnUInt, got {}.", indexes->getName());
}
}
static PaddedPODArray<Int64> extractIndexesWithRemapping(ColumnPtr indexes, ColumnPtr mapping, size_t start, size_t end, bool shift)
{
switch (indexes->getDataType())
{
case TypeIndex::UInt8:
return extractIndexesWithRemapping<UInt8>(indexes, mapping, start, end, shift);
case TypeIndex::UInt16:
return extractIndexesWithRemapping<UInt16>(indexes, mapping, start, end, shift);
case TypeIndex::UInt32:
return extractIndexesWithRemapping<UInt32>(indexes, mapping, start, end, shift);
case TypeIndex::UInt64:
return extractIndexesWithRemapping<UInt64>(indexes, mapping, start, end, shift);
default:
throw Exception(ErrorCodes::LOGICAL_ERROR, "Indexes column must be ColumnUInt, got {}.", indexes->getName());
}
}
template<typename ValueType>
static void fillArrowArrayWithLowCardinalityColumnDataImpl(
const String & column_name,
ColumnPtr & column,
const DataTypePtr & column_type,
const PaddedPODArray<UInt8> *,
arrow::ArrayBuilder * array_builder,
String format_name,
size_t start,
size_t end,
bool output_string_as_string,
bool output_fixed_string_as_fixed_byte_array,
std::unordered_map<String, MutableColumnPtr> & dictionary_values)
{
const auto * column_lc = assert_cast<const ColumnLowCardinality *>(column.get());
arrow::DictionaryBuilder<ValueType> * builder = assert_cast<arrow::DictionaryBuilder<ValueType> *>(array_builder);
auto & dict_values = dictionary_values[column_name];
bool is_nullable = column_type->isLowCardinalityNullable();
ColumnPtr mapping;
if (!dict_values)
{
/// On first time just remember the first dictionary
dict_values = IColumn::mutate(column_lc->getDictionaryPtr());
}
else
{
/// In ClickHouse blocks with same header can contain LowCardinality columns with
/// different dictionaries.
/// Arrow supports only single dictionary for all batches, but it allows to extend
/// dictionary if previous dictionary is a prefix of a new one.
/// So, if new LowCardinality column has different dictionary
/// we extend previous one by using IColumnUnique::uniqueInsertRangeFrom
/// and then remap indexes so they match with the new extended dictionary.
const auto & new_dict = column_lc->getDictionary();
auto & dict = dynamic_cast<IColumnUnique &>(*dict_values);
if (dict.getHash() != new_dict.getHash())
{
const auto & new_values = new_dict.getNestedColumn();
mapping = dict.uniqueInsertRangeFrom(*new_values, 0, new_values->size());
}
}
/// Convert dictionary values to arrow array.
auto value_type = assert_cast<arrow::DictionaryType *>(builder->type().get())->value_type();
std::unique_ptr<arrow::ArrayBuilder> values_builder;
arrow::MemoryPool* pool = arrow::default_memory_pool();
arrow::Status status = MakeBuilder(pool, value_type, &values_builder);
checkStatus(status, column->getName(), format_name);
auto dict_column = dynamic_cast<IColumnUnique &>(*dict_values).getNestedNotNullableColumn();
const auto & dict_type = removeNullable(assert_cast<const DataTypeLowCardinality *>(column_type.get())->getDictionaryType());
fillArrowArray(column_name, dict_column, dict_type, nullptr, values_builder.get(), format_name, is_nullable, dict_column->size(), output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
std::shared_ptr<arrow::Array> arrow_dict_array;
status = values_builder->Finish(&arrow_dict_array);
checkStatus(status, column->getName(), format_name);
status = builder->InsertMemoValues(*arrow_dict_array);
checkStatus(status, column->getName(), format_name);
/// AppendIndices in DictionaryBuilder works only with int64_t data, so we cannot use
/// fillArrowArray here and should copy all indexes to int64_t container.
PaddedPODArray<Int64> indexes;
if (mapping)
indexes = extractIndexesWithRemapping(column_lc->getIndexesPtr(), mapping, start, end, is_nullable);
else
indexes = extractIndexes(column_lc->getIndexesPtr(), start, end, is_nullable);
const uint8_t * arrow_null_bytemap_raw_ptr = nullptr;
PaddedPODArray<uint8_t> arrow_null_bytemap;
if (column_type->isLowCardinalityNullable())
{
arrow_null_bytemap.reserve(end - start);
for (size_t i = start; i < end; ++i)
arrow_null_bytemap.emplace_back(!column_lc->isNullAt(i));
arrow_null_bytemap_raw_ptr = arrow_null_bytemap.data();
}
status = builder->AppendIndices(indexes.data(), indexes.size(), arrow_null_bytemap_raw_ptr);
checkStatus(status, column->getName(), format_name);
}
static void fillArrowArrayWithLowCardinalityColumnData(
const String & column_name,
ColumnPtr & column,
const DataTypePtr & column_type,
const PaddedPODArray<UInt8> * null_bytemap,
arrow::ArrayBuilder * array_builder,
String format_name,
size_t start,
size_t end,
bool output_string_as_string,
bool output_fixed_string_as_fixed_byte_array,
std::unordered_map<String, MutableColumnPtr> & dictionary_values)
{
auto value_type = assert_cast<arrow::DictionaryType *>(array_builder->type().get())->value_type();
#define DISPATCH(ARROW_TYPE_ID, ARROW_TYPE) \
if (arrow::Type::ARROW_TYPE_ID == value_type->id()) \
{ \
fillArrowArrayWithLowCardinalityColumnDataImpl<ARROW_TYPE>(column_name, column, column_type, null_bytemap, array_builder, format_name, start, end, output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values); \
return; \
}
FOR_ARROW_TYPES(DISPATCH)
#undef DISPATCH
throw Exception(ErrorCodes::LOGICAL_ERROR, "Cannot fill arrow array with {} data.", column_type->getName());
}
template <typename ColumnType, typename ArrowBuilder>
static void fillArrowArrayWithStringColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto & internal_column = assert_cast<const ColumnType &>(*write_column);
ArrowBuilder & builder = assert_cast<ArrowBuilder &>(*array_builder);
arrow::Status status;
for (size_t string_i = start; string_i < end; ++string_i)
{
if (null_bytemap && (*null_bytemap)[string_i])
{
status = builder.AppendNull();
}
else
{
std::string_view string_ref = internal_column.getDataAt(string_i).toView();
status = builder.Append(string_ref.data(), static_cast<int>(string_ref.size()));
}
checkStatus(status, write_column->getName(), format_name);
}
}
static void fillArrowArrayWithFixedStringColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto & internal_column = assert_cast<const ColumnFixedString &>(*write_column);
const auto & internal_data = internal_column.getChars();
size_t fixed_length = internal_column.getN();
arrow::FixedSizeBinaryBuilder & builder = assert_cast<arrow::FixedSizeBinaryBuilder &>(*array_builder);
PaddedPODArray<UInt8> arrow_null_bytemap = revertNullByteMap(null_bytemap, start, end);
const UInt8 * arrow_null_bytemap_raw_ptr = arrow_null_bytemap.empty() ? nullptr : arrow_null_bytemap.data();
const uint8_t * data_start = reinterpret_cast<const uint8_t *>(internal_data.data() + start * fixed_length);
arrow::Status status = builder.AppendValues(data_start, end - start, reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
checkStatus(status, write_column->getName(), format_name);
}
static void fillArrowArrayWithIPv6ColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto & internal_column = assert_cast<const ColumnIPv6 &>(*write_column);
const auto & internal_data = internal_column.getData();
size_t fixed_length = sizeof(IPv6);
arrow::FixedSizeBinaryBuilder & builder = assert_cast<arrow::FixedSizeBinaryBuilder &>(*array_builder);
PaddedPODArray<UInt8> arrow_null_bytemap = revertNullByteMap(null_bytemap, start, end);
const UInt8 * arrow_null_bytemap_raw_ptr = arrow_null_bytemap.empty() ? nullptr : arrow_null_bytemap.data();
const uint8_t * data_start = reinterpret_cast<const uint8_t *>(internal_data.data()) + start * fixed_length;
arrow::Status status = builder.AppendValues(data_start, end - start, reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
checkStatus(status, write_column->getName(), format_name);
}
static void fillArrowArrayWithIPv4ColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto & internal_data = assert_cast<const ColumnIPv4 &>(*write_column).getData();
auto & builder = assert_cast<arrow::UInt32Builder &>(*array_builder);
PaddedPODArray<UInt8> arrow_null_bytemap = revertNullByteMap(null_bytemap, start, end);
const UInt8 * arrow_null_bytemap_raw_ptr = arrow_null_bytemap.empty() ? nullptr : arrow_null_bytemap.data();
arrow::Status status = builder.AppendValues(&(internal_data.data() + start)->toUnderType(), end - start, reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
checkStatus(status, write_column->getName(), format_name);
}
static void fillArrowArrayWithDateColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const PaddedPODArray<UInt16> & internal_data = assert_cast<const ColumnVector<UInt16> &>(*write_column).getData();
arrow::UInt16Builder & builder = assert_cast<arrow::UInt16Builder &>(*array_builder);
arrow::Status status;
for (size_t value_i = start; value_i < end; ++value_i)
{
if (null_bytemap && (*null_bytemap)[value_i])
status = builder.AppendNull();
else
status = builder.Append(internal_data[value_i]);
checkStatus(status, write_column->getName(), format_name);
}
}
static void fillArrowArrayWithDateTimeColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto & internal_data = assert_cast<const ColumnVector<UInt32> &>(*write_column).getData();
arrow::UInt32Builder & builder = assert_cast<arrow::UInt32Builder &>(*array_builder);
arrow::Status status;
for (size_t value_i = start; value_i < end; ++value_i)
{
if (null_bytemap && (*null_bytemap)[value_i])
status = builder.AppendNull();
else
status = builder.Append(internal_data[value_i]);
checkStatus(status, write_column->getName(), format_name);
}
}
static void fillArrowArrayWithDate32ColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const PaddedPODArray<Int32> & internal_data = assert_cast<const ColumnVector<Int32> &>(*write_column).getData();
arrow::Date32Builder & builder = assert_cast<arrow::Date32Builder &>(*array_builder);
arrow::Status status;
for (size_t value_i = start; value_i < end; ++value_i)
{
if (null_bytemap && (*null_bytemap)[value_i])
status = builder.AppendNull();
else
status = builder.Append(internal_data[value_i]);
checkStatus(status, write_column->getName(), format_name);
}
}
template <typename DataType, typename FieldType, typename ArrowDecimalType, typename ArrowBuilder>
static void fillArrowArrayWithDecimalColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
arrow::ArrayBuilder * array_builder,
const String & format_name,
size_t start,
size_t end)
{
const auto & column = assert_cast<const typename DataType::ColumnType &>(*write_column);
ArrowBuilder & builder = assert_cast<ArrowBuilder &>(*array_builder);
arrow::Status status;
for (size_t value_i = start; value_i < end; ++value_i)
{
if (null_bytemap && (*null_bytemap)[value_i])
status = builder.AppendNull();
else
{
FieldType element = FieldType(column.getElement(value_i).value);
status = builder.Append(ArrowDecimalType(reinterpret_cast<const uint8_t *>(&element))); // TODO: try copy column
}
checkStatus(status, write_column->getName(), format_name);
}
checkStatus(status, write_column->getName(), format_name);
}
template <typename ColumnType>
static void fillArrowArrayWithBigIntegerColumnData(
ColumnPtr write_column,
const PaddedPODArray<UInt8> * null_bytemap,
const String & format_name,
arrow::ArrayBuilder* array_builder,
size_t start,
size_t end)
{
const auto & internal_column = assert_cast<const ColumnType &>(*write_column);
const auto & internal_data = internal_column.getData();
size_t fixed_length = sizeof(typename ColumnType::ValueType);
arrow::FixedSizeBinaryBuilder & builder = assert_cast<arrow::FixedSizeBinaryBuilder &>(*array_builder);
PaddedPODArray<UInt8> arrow_null_bytemap = revertNullByteMap(null_bytemap, start, end);
const UInt8 * arrow_null_bytemap_raw_ptr = arrow_null_bytemap.empty() ? nullptr : arrow_null_bytemap.data();
const uint8_t * data_start = reinterpret_cast<const uint8_t *>(internal_data.data()) + start * fixed_length;
arrow::Status status = builder.AppendValues(data_start, end - start, reinterpret_cast<const uint8_t *>(arrow_null_bytemap_raw_ptr));
checkStatus(status, write_column->getName(), format_name);
}
static void fillArrowArray(
const String & column_name,
ColumnPtr & column,
const DataTypePtr & column_type,
const PaddedPODArray<UInt8> * null_bytemap,
arrow::ArrayBuilder * array_builder,
String format_name,
size_t start,
size_t end,
bool output_string_as_string,
bool output_fixed_string_as_fixed_byte_array,
std::unordered_map<String, MutableColumnPtr> & dictionary_values)
{
switch (column_type->getTypeId())
{
case TypeIndex::Nullable:
{
const ColumnNullable * column_nullable = assert_cast<const ColumnNullable *>(column.get());
ColumnPtr nested_column = column_nullable->getNestedColumnPtr();
DataTypePtr nested_type = assert_cast<const DataTypeNullable *>(column_type.get())->getNestedType();
const ColumnPtr & null_column = column_nullable->getNullMapColumnPtr();
const PaddedPODArray<UInt8> & bytemap = assert_cast<const ColumnVector<UInt8> &>(*null_column).getData();
fillArrowArray(column_name, nested_column, nested_type, &bytemap, array_builder, format_name, start, end, output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
break;
}
case TypeIndex::String:
{
if (output_string_as_string)
fillArrowArrayWithStringColumnData<ColumnString, arrow::StringBuilder>(column, null_bytemap, format_name, array_builder, start, end);
else
fillArrowArrayWithStringColumnData<ColumnString, arrow::BinaryBuilder>(column, null_bytemap, format_name, array_builder, start, end);
break;
}
case TypeIndex::FixedString:
{
if (output_fixed_string_as_fixed_byte_array)
fillArrowArrayWithFixedStringColumnData(column, null_bytemap, format_name, array_builder, start, end);
else if (output_string_as_string)
fillArrowArrayWithStringColumnData<ColumnFixedString, arrow::StringBuilder>(column, null_bytemap, format_name, array_builder, start, end);
else
fillArrowArrayWithStringColumnData<ColumnFixedString, arrow::BinaryBuilder>(column, null_bytemap, format_name, array_builder, start, end);
break;
}
case TypeIndex::IPv6:
fillArrowArrayWithIPv6ColumnData(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::IPv4:
fillArrowArrayWithIPv4ColumnData(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::Date:
fillArrowArrayWithDateColumnData(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::DateTime:
fillArrowArrayWithDateTimeColumnData(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::Date32:
fillArrowArrayWithDate32ColumnData(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::Array:
fillArrowArrayWithArrayColumnData<arrow::ListBuilder>(column_name, column, column_type, null_bytemap, array_builder, format_name, start, end, output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
break;
case TypeIndex::Tuple:
fillArrowArrayWithTupleColumnData(column_name, column, column_type, null_bytemap, array_builder, format_name, start, end, output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
break;
case TypeIndex::LowCardinality:
fillArrowArrayWithLowCardinalityColumnData(column_name, column, column_type, null_bytemap, array_builder, format_name, start, end, output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
break;
case TypeIndex::Map:
{
ColumnPtr column_array = assert_cast<const ColumnMap *>(column.get())->getNestedColumnPtr();
DataTypePtr array_type = assert_cast<const DataTypeMap *>(column_type.get())->getNestedType();
fillArrowArrayWithArrayColumnData<arrow::MapBuilder>(column_name, column_array, array_type, null_bytemap, array_builder, format_name, start, end, output_string_as_string, output_fixed_string_as_fixed_byte_array, dictionary_values);
break;
}
case TypeIndex::Decimal32:
fillArrowArrayWithDecimalColumnData<DataTypeDecimal32, Int128, arrow::Decimal128, arrow::Decimal128Builder>(column, null_bytemap, array_builder, format_name, start, end);
break;
case TypeIndex::Decimal64:
fillArrowArrayWithDecimalColumnData<DataTypeDecimal64, Int128, arrow::Decimal128, arrow::Decimal128Builder>(column, null_bytemap, array_builder, format_name, start, end);
break;
case TypeIndex::Decimal128:
fillArrowArrayWithDecimalColumnData<DataTypeDecimal128, Int128, arrow::Decimal128, arrow::Decimal128Builder>(column, null_bytemap, array_builder, format_name, start, end);
break;
case TypeIndex::Decimal256:
fillArrowArrayWithDecimalColumnData<DataTypeDecimal256, Int256, arrow::Decimal256, arrow::Decimal256Builder>(column, null_bytemap, array_builder, format_name, start, end);
break;
case TypeIndex::DateTime64:
fillArrowArrayWithDateTime64ColumnData(column_type, column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::UInt8:
{
if (isBool(column_type))
fillArrowArrayWithBoolColumnData(column, null_bytemap, format_name, array_builder, start, end);
else
fillArrowArrayWithNumericColumnData<UInt8, arrow::UInt8Builder>(column, null_bytemap, format_name, array_builder, start, end);
break;
}
case TypeIndex::Enum8:
fillArrowArrayWithNumericColumnData<Int8, arrow::Int8Builder>(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::Enum16:
fillArrowArrayWithNumericColumnData<Int16, arrow::Int16Builder>(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::Int128:
fillArrowArrayWithBigIntegerColumnData<ColumnInt128>(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::UInt128:
fillArrowArrayWithBigIntegerColumnData<ColumnUInt128>(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::Int256:
fillArrowArrayWithBigIntegerColumnData<ColumnInt256>(column, null_bytemap, format_name, array_builder, start, end);
break;
case TypeIndex::UInt256:
fillArrowArrayWithBigIntegerColumnData<ColumnUInt256>(column, null_bytemap, format_name, array_builder, start, end);
break;
#define DISPATCH(CPP_NUMERIC_TYPE, ARROW_BUILDER_TYPE) \
case TypeIndex::CPP_NUMERIC_TYPE: \
fillArrowArrayWithNumericColumnData<CPP_NUMERIC_TYPE, ARROW_BUILDER_TYPE>(column, null_bytemap, format_name, array_builder, start, end); \
break;
FOR_INTERNAL_NUMERIC_TYPES(DISPATCH)
#undef DISPATCH
default:
throw Exception(ErrorCodes::UNKNOWN_TYPE, "Internal type '{}' of a column '{}' is not supported for conversion into {} data format.", column_type->getFamilyName(), column_name, format_name);
}
}
static std::shared_ptr<arrow::DataType> getArrowTypeForLowCardinalityIndexes(ColumnPtr indexes_column)
{
/// Arrow docs recommend preferring signed integers over unsigned integers for representing dictionary indices.
/// https://arrow.apache.org/docs/format/Columnar.html#dictionary-encoded-layout
switch (indexes_column->getDataType())
{
case TypeIndex::UInt8:
return arrow::int8();
case TypeIndex::UInt16:
return arrow::int16();
case TypeIndex::UInt32:
return arrow::int32();
case TypeIndex::UInt64:
return arrow::int64();
default:
throw Exception(ErrorCodes::LOGICAL_ERROR, "Indexes column for getUniqueIndex must be ColumnUInt, got {}.", indexes_column->getName());
}
}
static arrow::TimeUnit::type getArrowTimeUnit(const DataTypeDateTime64 * type)
{
UInt32 scale = type->getScale();
if (scale == 0)
return arrow::TimeUnit::SECOND;
if (scale > 0 && scale <= 3)
return arrow::TimeUnit::MILLI;
if (scale > 3 && scale <= 6)
return arrow::TimeUnit::MICRO;
return arrow::TimeUnit::NANO;
}
static std::shared_ptr<arrow::DataType> getArrowType(
DataTypePtr column_type, ColumnPtr column, const std::string & column_name, const std::string & format_name, bool output_string_as_string, bool output_fixed_string_as_fixed_byte_array, bool * out_is_column_nullable)
{
if (column_type->isNullable())
{
DataTypePtr nested_type = assert_cast<const DataTypeNullable *>(column_type.get())->getNestedType();
ColumnPtr nested_column = assert_cast<const ColumnNullable *>(column.get())->getNestedColumnPtr();
auto arrow_type = getArrowType(nested_type, nested_column, column_name, format_name, output_string_as_string, output_fixed_string_as_fixed_byte_array, out_is_column_nullable);
*out_is_column_nullable = true;
return arrow_type;
}
if (isDecimal(column_type))
{
std::shared_ptr<arrow::DataType> arrow_type;
const auto create_arrow_type = [&](const auto & types) -> bool {
using Types = std::decay_t<decltype(types)>;
using ToDataType = typename Types::LeftType;
if constexpr (
std::is_same_v<ToDataType, DataTypeDecimal<Decimal32>>
|| std::is_same_v<ToDataType, DataTypeDecimal<Decimal64>>
|| std::is_same_v<ToDataType, DataTypeDecimal<Decimal128>>
|| std::is_same_v<ToDataType, DataTypeDecimal<Decimal256>>)
{
const auto & decimal_type = assert_cast<const ToDataType *>(column_type.get());
arrow_type = arrow::decimal(decimal_type->getPrecision(), decimal_type->getScale());
return true;
}
return false;
};
if (!callOnIndexAndDataType<void>(column_type->getTypeId(), create_arrow_type))
throw Exception{ErrorCodes::LOGICAL_ERROR, "Cannot convert decimal type {} to arrow type", column_type->getFamilyName()};
return arrow_type;
}
if (isArray(column_type))
{
auto nested_type = assert_cast<const DataTypeArray *>(column_type.get())->getNestedType();
auto nested_column = assert_cast<const ColumnArray *>(column.get())->getDataPtr();
auto nested_arrow_type = getArrowType(nested_type, nested_column, column_name, format_name, output_string_as_string, output_fixed_string_as_fixed_byte_array, out_is_column_nullable);
return arrow::list(nested_arrow_type);
}
if (isTuple(column_type))
{
const auto & tuple_type = assert_cast<const DataTypeTuple *>(column_type.get());
const auto & nested_types = tuple_type->getElements();
const auto & nested_names = tuple_type->getElementNames();
const auto * tuple_column = assert_cast<const ColumnTuple *>(column.get());
std::vector<std::shared_ptr<arrow::Field>> nested_fields;
for (size_t i = 0; i != nested_types.size(); ++i)
{
auto nested_arrow_type = getArrowType(nested_types[i], tuple_column->getColumnPtr(i), nested_names[i], format_name, output_string_as_string, output_fixed_string_as_fixed_byte_array, out_is_column_nullable);
nested_fields.push_back(std::make_shared<arrow::Field>(nested_names[i], nested_arrow_type, *out_is_column_nullable));
}
return arrow::struct_(nested_fields);
}
if (column_type->lowCardinality())
{
auto nested_type = assert_cast<const DataTypeLowCardinality *>(column_type.get())->getDictionaryType();
const auto * lc_column = assert_cast<const ColumnLowCardinality *>(column.get());
const auto & nested_column = lc_column->getDictionary().getNestedColumn();
const auto & indexes_column = lc_column->getIndexesPtr();
return arrow::dictionary(
getArrowTypeForLowCardinalityIndexes(indexes_column),
getArrowType(nested_type, nested_column, column_name, format_name, output_string_as_string, output_fixed_string_as_fixed_byte_array, out_is_column_nullable));
}
if (isMap(column_type))
{
const auto * map_type = assert_cast<const DataTypeMap *>(column_type.get());
const auto & key_type = map_type->getKeyType();
const auto & val_type = map_type->getValueType();
const auto & columns = assert_cast<const ColumnMap *>(column.get())->getNestedData().getColumns();
return arrow::map(
getArrowType(key_type, columns[0], column_name, format_name, output_string_as_string, output_fixed_string_as_fixed_byte_array, out_is_column_nullable),
getArrowType(val_type, columns[1], column_name, format_name, output_string_as_string, output_fixed_string_as_fixed_byte_array, out_is_column_nullable));
}
if (isDateTime64(column_type))
{
const auto * datetime64_type = assert_cast<const DataTypeDateTime64 *>(column_type.get());
return arrow::timestamp(getArrowTimeUnit(datetime64_type), datetime64_type->getTimeZone().getTimeZone());
}
if (isFixedString(column_type) && output_fixed_string_as_fixed_byte_array)
{
size_t fixed_length = assert_cast<const DataTypeFixedString *>(column_type.get())->getN();
return arrow::fixed_size_binary(static_cast<int32_t>(fixed_length));
}
if (isStringOrFixedString(column_type) && output_string_as_string)
return arrow::utf8();
if (isBool(column_type))
return arrow::boolean();
if (isIPv6(column_type))
return arrow::fixed_size_binary(sizeof(IPv6));
if (isIPv4(column_type))
return arrow::uint32();
const std::string type_name = column_type->getFamilyName();
if (const auto * arrow_type_it = std::find_if(
internal_type_to_arrow_type.begin(),
internal_type_to_arrow_type.end(),
[=](auto && elem) { return elem.first == type_name; });
arrow_type_it != internal_type_to_arrow_type.end())
{
return arrow_type_it->second;
}
throw Exception(ErrorCodes::UNKNOWN_TYPE,
"The type '{}' of a column '{}' is not supported for conversion into {} data format.",
column_type->getName(), column_name, format_name);
}
CHColumnToArrowColumn::CHColumnToArrowColumn(
const Block & header,
const std::string & format_name_,
bool low_cardinality_as_dictionary_,
bool output_string_as_string_,
bool output_fixed_string_as_fixed_byte_array_)
: format_name(format_name_)
, low_cardinality_as_dictionary(low_cardinality_as_dictionary_)
, output_string_as_string(output_string_as_string_)
, output_fixed_string_as_fixed_byte_array(output_fixed_string_as_fixed_byte_array_)
{
arrow_fields.reserve(header.columns());
header_columns.reserve(header.columns());
for (auto column : header.getColumnsWithTypeAndName())
{
if (!low_cardinality_as_dictionary)
{
column.type = recursiveRemoveLowCardinality(column.type);
column.column = recursiveRemoveLowCardinality(column.column);
}
header_columns.emplace_back(std::move(column));
}
}
void CHColumnToArrowColumn::chChunkToArrowTable(
std::shared_ptr<arrow::Table> & res,
const std::vector<Chunk> & chunks,
size_t columns_num)
{
std::shared_ptr<arrow::Schema> arrow_schema;
std::vector<arrow::ArrayVector> table_data(columns_num);
for (const auto & chunk : chunks)
{
/// For arrow::Schema and arrow::Table creation
for (size_t column_i = 0; column_i < columns_num; ++column_i)
{
const ColumnWithTypeAndName & header_column = header_columns[column_i];
auto column = chunk.getColumns()[column_i];
if (!low_cardinality_as_dictionary)
column = recursiveRemoveLowCardinality(column);
if (!is_arrow_fields_initialized)
{
bool is_column_nullable = false;
auto arrow_type = getArrowType(
header_column.type,
column,
header_column.name,
format_name,
output_string_as_string,
output_fixed_string_as_fixed_byte_array,
&is_column_nullable);
arrow_fields.emplace_back(std::make_shared<arrow::Field>(header_column.name, arrow_type, is_column_nullable));
}
arrow::MemoryPool * pool = arrow::default_memory_pool();
std::unique_ptr<arrow::ArrayBuilder> array_builder;
arrow::Status status = MakeBuilder(pool, arrow_fields[column_i]->type(), &array_builder);
checkStatus(status, column->getName(), format_name);
fillArrowArray(
header_column.name,
column,
header_column.type,
nullptr,
array_builder.get(),
format_name,
0,
column->size(),
output_string_as_string,
output_fixed_string_as_fixed_byte_array,
dictionary_values);
std::shared_ptr<arrow::Array> arrow_array;
status = array_builder->Finish(&arrow_array);
checkStatus(status, column->getName(), format_name);
table_data.at(column_i).emplace_back(std::move(arrow_array));
}
is_arrow_fields_initialized = true;
if (!arrow_schema)
arrow_schema = std::make_shared<arrow::Schema>(arrow_fields);
}
std::vector<std::shared_ptr<arrow::ChunkedArray>> columns;
columns.reserve(columns_num);
for (size_t column_i = 0; column_i < columns_num; ++column_i)
columns.emplace_back(std::make_shared<arrow::ChunkedArray>(table_data.at(column_i)));
res = arrow::Table::Make(arrow_schema, columns);
}
}
#endif
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